SubscribeSince we have so many open source projects, we decided to launch a GitHub page: http://github.com/triplett
Gut microbiome paper published in PLoS One
“Gut Microbiome Metagenomics Analysis Suggests a Functional Model for the Development of Autoimmunity for Type 1 Diabetes” Read it in PLoS One.
See our GitHub!
You can now track the development of Pangea and TaxCollector on our GitHub page.
TaxCollector Published
Our project TaxCollector has been published in MPDI Diversity. Abstract The high level of conservation of 16S ribosomal RNA gene (16S rRNA) in all Prokaryotes makes this gene an ideal tool for the rapid identification and classification of these microorganisms. Databases such as the Ribosomal Database Project II (RDP-II) and the Greengenes Project offer access [...]
Pangea Paper available at ISME
The paper on PANGEA has been released and is available in Nature’s Journal of Microbial Ecology. Abstract High-throughput DNA sequencing can identify organisms and describe population structures in many environmental and clinical samples. Current technologies generate millions of reads in a single run, requiring extensive computational strategies to organize, analyze and interpret those sequences. A [...]
Pangea available on SourceForge
You can now download Pangea from SourceForge.net Here is the URL: http://pangea-16s.sourceforge.net/. SourceForge.net is the world’s largest provider of hosting for Open Source software development projects. SourceForge.net provides a variety of services to projects, including a download mirror network, collaborative development tools (like CVS and Subversion), and tools to support discussion and support. These services [...]